Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs145584710 chr2:29516296 T/TA 0 134 43.68 24.23 0.57 KM Plot
TGCT rs146598431 chr16:67646396 G/T 0 133 46.07 24.1 0.57 KM Plot
TGCT rs146761481 chr20:44794208 CAATA/C 0.000157 132 37.62 70.6 33.45 KM Plot
TGCT rs1472526 chr5:1776840 G/A 3.93E-6 128 43.68 41.97 46.3 KM Plot
TGCT rs147586807 chr16:67629452 GTCT/G 0 133 46.07 24.1 0.57 KM Plot
TGCT rs148233139 chr17:39392227 T/TAG 8.92E-7 131 13.17 36.63 43.68 KM Plot
TGCT rs148266593 chr10:27593480 G/C 0 127 42.18 45.83 18.85 KM Plot
TGCT rs148539693 chr2:9732516 ATCT/A 5.47E-5 133 43.68 41.97 27.33 KM Plot
TGCT rs148679398 chr14:78254652 C/T 7.3E-5 134 45.83 37.95 18.07 KM Plot
TGCT rs148916699 chr6:15252083 C/T 3.36E-5 133 37.7 45.93 NA KM Plot
TGCT rs148966697 chr6:156982132 T/TAAC 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs149079055 chr5:42531351 A/G 9.12E-5 133 37.7 52.43 20.23 KM Plot
TGCT rs149370723 chr6:15248332 C/T 3.68E-5 132 37.95 45.93 NA KM Plot
TGCT rs149707159 chr1:14576969 GC/G 8.86E-7 133 42.27 28.8 0.57 KM Plot
TGCT rs150100093 chr4:154729074 T/TG 8.84E-5 134 40.57 42.1 50.9 KM Plot